Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
177
ATAC-seq
41
WGBS
34
single cell RNA-seq
23
ChIP-seq
22
snATAC-seq
1
pCHi-C
Assay category
250
Transcription
199
DNA accessibility
41
DNA methylation
23
DNA binding
Target of assay
27
histone
27
histone modification
narrow histone mark
23
control
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
280
bam
253
bigWig
189
tsv
134
zippedFastqFolder
38
bed narrowPeak
24
fastq
23
tagAlign
7
txt
1
bed bed3+
Organism
514
Homo sapiens
Biosample type
281
primary cell
232
tissue
1
cell line
Organ
207
liver
104
pancreas
80
epithelium
2
musculature of body
Project
335
AMP
134
HPAP
45
T1D
Genome assembly (visualization)
272
hg19
188
GRCh38
Lab
271
AMP-T2D consortium
134
Klaus Kaestner, Upenn
69
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
514 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
+ See 28 more…
tissue
liver
163
20
23
islet of Langerhans
6
18
skeletal muscle tissue
1
1
cell line
HepG2
1
See all biosamples
Download