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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
85
total RNA-seq
82
ATAC-seq
41
WGBS
33
single cell RNA-seq
21
snATAC-seq
17
pCHi-C
Assay category
154
DNA binding
118
Transcription
103
DNA accessibility
41
DNA methylation
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
195
bigWig
159
bam
152
bed narrowPeak
134
zippedFastqFolder
84
tagAlign
51
tsv
24
fastq
6
txt
2
bed bed3+
Organism
433
Homo sapiens
Biosample type
320
primary cell
66
tissue
47
in vitro differentiated cells
Organ
105
pancreas
80
epithelium
40
liver
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
147
AMP
134
HPAP
Genome assembly (visualization)
213
hg19
135
GRCh38
Lab
259
Kyle Gaulton, UCSD
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
433 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
pCHi-C
primary cell
monocyte
84
51
1
Langerhans cell
33
21
pancreatic alpha cell
22
25
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
13
16
+ See 14 more…
tissue
liver
20
20
islet of Langerhans
6
18
pancreas
1
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
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