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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
ChIP-seq
38
ATAC-seq
1
snATAC-seq
Assay category
281
DNA binding
39
DNA accessibility
Target of assay
238
transcription factor
65
recombinant protein
34
RNA binding protein
24
histone
24
histone modification
16
control
15
chromatin remodeller
14
narrow histone mark
10
broad histone mark
2
other context
2
other post-translational modification
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
301
bigWig
298
bam
297
bed narrowPeak
293
fastq
258
bigBed narrowPeak
70
bed broadPeak
64
bigBed broadPeak
18
tagAlign
3
tar
1
bed bed3+
1
txt
Organism
320
Homo sapiens
Biosample type
266
cell line
45
tissue
9
primary cell
Organ
286
liver
18
pancreas
15
brain
6
epithelium
6
vasculature
3
blood vessel
1
musculature of body
Project
320
AMP
Genome assembly (visualization)
320
hg19
280
GRCh38
Lab
282
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
320 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
cell line
HepG2
266
tissue
liver
20
islet of Langerhans
18
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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