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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
Assay category
438
DNA binding
DNA accessibility
87
Transcription
41
DNA methylation
Target of assay
244
transcription factor
120
histone
120
histone modification
71
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
456
bam
392
bigWig
389
fastq
345
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
74
zippedFastqFolder
70
bed broadPeak
64
bigBed broadPeak
26
tsv
6
txt
3
tar
1
csv
Organism
566
Homo sapiens
Biosample type
315
cell line
142
primary cell
109
tissue
Organ
335
liver
105
pancreas
94
epithelium
91
brain
6
vasculature
3
blood vessel
1
musculature of body
Project
492
AMP
74
HPAP
Genome assembly (visualization)
339
hg19
338
GRCh38
Lab
466
AMP-T2D consortium
74
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
566 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
cell line
HepG2
315
primary cell
pancreatic alpha cell
10
25
Langerhans cell
33
pancreatic beta cell
10
16
pancreatic ductal cell
13
4
pancreatic endocrine cell
11
+ See 5 more…
tissue
layer of hippocampus
22
liver
20
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 4 more…
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