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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
91
ATAC-seq
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
Assay category
438
DNA binding
113
DNA accessibility
41
DNA methylation
35
Transcription
Target of assay
244
transcription factor
120
histone
120
histone modification
71
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
456
bam
400
bigWig
397
bed narrowPeak
389
fastq
326
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
1
bed bed3+
1
csv
1
txt
Organism
627
Homo sapiens
Biosample type
315
cell line
190
primary cell
122
tissue
Organ
335
liver
144
pancreas
121
epithelium
91
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
493
AMP
134
HPAP
Genome assembly (visualization)
366
hg19
326
GRCh38
Lab
455
AMP-T2D consortium
134
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
627 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
cell line
HepG2
315
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
25
pancreatic beta cell
17
16
pancreatic ductal cell
13
4
pancreatic acinar cell
8
7
+ See 5 more…
tissue
layer of hippocampus
22
liver
20
islet of Langerhans
18
caudate nucleus
15
substantia nigra
15
+ See 4 more…
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