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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
91
ATAC-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
Assay category
438
DNA binding
113
DNA accessibility
87
Transcription
41
DNA methylation
Target of assay
244
transcription factor
120
histone
120
histone modification
71
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
488
bam
426
bigWig
421
fastq
397
bed narrowPeak
326
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
26
tsv
7
txt
3
tar
1
bed bed3+
1
csv
Organism
679
Homo sapiens
Biosample type
315
cell line
216
primary cell
148
tissue
Organ
355
liver
176
pancreas
147
epithelium
91
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
545
AMP
134
HPAP
Genome assembly (visualization)
392
hg19
352
GRCh38
Lab
481
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
September, 2020
BIOSAMPLE
ASSAY
679 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
cell line
HepG2
315
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
13
4
4
pancreatic acinar cell
8
7
2
+ See 5 more…
tissue
liver
20
20
islet of Langerhans
18
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 4 more…
See all biosamples
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