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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
41
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
7
ChIP-seq
Assay category
79
DNA accessibility
61
Transcription
41
DNA methylation
7
DNA binding
Target of assay
6
control
1
recombinant protein
1
transcription factor
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
112
fastq
111
bam
111
bed narrowPeak
bigWig
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
188
Homo sapiens
Biosample type
135
primary cell
49
tissue
4
cell line
Organ
104
pancreas
80
epithelium
21
liver
3
blood
3
bodily fluid
3
spleen
2
musculature of body
Project
134
HPAP
54
AMP
Genome assembly (visualization)
19
hg19
Lab
134
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
islet of Langerhans
18
6
liver
20
spleen
3
skeletal muscle tissue
1
1
cell line
GM12878
3
HepG2
1
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