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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
67
ChIP-seq
48
WGBS
35
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
99
DNA accessibility
67
DNA binding
61
Transcription
48
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
other context
3
other post-translational modification
Date released
713
February, 2021
404
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
76
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
109
fastq
108
bam
108
bed narrowPeak
97
bigWig
70
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
275
Homo sapiens
Biosample type
135
primary cell
79
tissue
61
cell line
Organ
109
pancreas
90
liver
80
epithelium
15
blood
15
bodily fluid
5
spleen
1
musculature of body
Project
141
AMP
134
HPAP
Genome assembly (visualization)
97
hg19
67
GRCh38
Lab
134
Klaus Kaestner, Upenn
77
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
other context
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
275 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
4
20
islet of Langerhans
18
6
spleen
3
2
pancreas
2
1
body of pancreas
2
+ See 1 more…
cell line
HepG2
45
1
GM12878
15
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