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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
46
total RNA-seq
13
ChIP-seq
2
Hi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
65
DNA accessibility
47
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
83
bam
75
bed narrowPeak
51
bigWig
24
fastq
20
tsv
7
txt
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
127
Homo sapiens
Biosample type
primary cell
106
tissue
16
cell line
5
in vitro differentiated cells
Organ
79
pancreas
40
liver
16
epithelium
2
musculature of body
1
adipose tissue
1
connective tissue
Project
127
AMP
Genome assembly (visualization)
98
hg19
57
GRCh38
Lab
63
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
1
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
37
25
1
liver
20
20
skeletal muscle tissue
1
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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