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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
40
ATAC-seq
13
ChIP-seq
1
Hi-C
1
total RNA-seq
Assay category
41
DNA methylation
40
DNA accessibility
13
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
80
zippedFastqFolder
15
bam
12
bed narrowPeak
12
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
96
Homo sapiens
Biosample type
80
primary cell
16
cell line
Organ
159
pancreas
96
epithelium
40
liver
2
musculature of body
1
adipose tissue
1
connective tissue
Project
80
HPAP
16
AMP
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
80
Klaus Kaestner, Upenn
16
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
96 results
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Clear Filters
WGBS
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
primary cell
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
EndoC_BH1
1
13
1
1
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