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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ATAC-seq
41
WGBS
34
single cell RNA-seq
24
total RNA-seq
22
snATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
83
DNA accessibility
58
Transcription
41
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
25
bigWig
22
bed narrowPeak
6
bam
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
txt
Organism
192
Homo sapiens
Biosample type
140
primary cell
46
tissue
6
cell line
Organ
90
pancreas
86
epithelium
40
liver
6
connective tissue
2
musculature of body
Project
134
HPAP
58
AMP
Genome assembly (visualization)
27
hg19
6
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
8
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
192 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
osteoblast
1
4
1
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
4
skeletal muscle tissue
1
1
cell line
EndoC_BH1
6
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