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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
74
ChIP-seq
41
WGBS
22
snATAC-seq
Assay category
99
DNA accessibility
74
DNA binding
Transcription
41
DNA methylation
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
101
zippedFastqFolder
92
bam
83
bed narrowPeak
76
fastq
65
bigWig
45
bigBed narrowPeak
1
bed bed3+
1
txt
Organism
214
Homo sapiens
Biosample type
113
tissue
101
primary cell
Organ
149
pancreas
80
epithelium
23
adipose tissue
23
connective tissue
20
liver
1
musculature of body
Project
113
AMP
101
HPAP
Genome assembly (visualization)
84
hg19
45
GRCh38
Lab
101
Klaus Kaestner, Upenn
75
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
tissue
body of pancreas
33
liver
20
islet of Langerhans
18
endocrine pancreas
16
subcutaneous adipose tissue
12
+ See 3 more…
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
Langerhans cell
21
pancreatic acinar cell
4
See all biosamples
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