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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
480
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
28
total RNA-seq
23
snATAC-seq
Assay category
480
DNA binding
100
DNA accessibility
62
Transcription
41
DNA methylation
Target of assay
259
transcription factor
118
histone
118
histone modification
100
control
69
broad histone mark
66
recombinant protein
49
narrow histone mark
48
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
492
bam
408
fastq
401
bigWig
396
bed narrowPeak
357
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
7
txt
3
tar
2
tsv
1
bed bed3+
Organism
683
Homo sapiens
Biosample type
315
cell line
223
tissue
145
primary cell
Organ
355
liver
158
pancreas
91
brain
88
epithelium
23
adipose tissue
23
connective tissue
6
vasculature
3
blood vessel
2
musculature of body
Project
549
AMP
134
HPAP
Genome assembly (visualization)
367
hg19
327
GRCh38
Lab
485
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
audit script error
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
683 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
cell line
HepG2
315
tissue
liver
20
20
body of pancreas
33
islet of Langerhans
18
6
1
layer of hippocampus
22
endocrine pancreas
16
+ See 9 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
2
astrocyte of the cerebellum
3
+ See 2 more…
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