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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
91
ATAC-seq
54
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
Assay category
113
DNA accessibility
106
DNA binding
89
Transcription
41
DNA methylation
Target of assay
62
histone
62
histone modification
36
broad histone mark
29
control
26
narrow histone mark
15
transcription factor
11
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
172
bam
157
fastq
139
bigWig
134
zippedFastqFolder
129
bed narrowPeak
59
bigBed narrowPeak
28
tsv
7
txt
1
bed bed3+
1
csv
Organism
349
Homo sapiens
Biosample type
209
primary cell
140
tissue
Organ
229
pancreas
143
epithelium
40
liver
23
adipose tissue
23
connective tissue
2
musculature of body
Project
215
AMP
134
HPAP
Genome assembly (visualization)
158
hg19
119
GRCh38
Lab
151
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
349 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
13
4
4
pancreatic acinar cell
8
7
4
+ See 2 more…
tissue
liver
20
20
body of pancreas
33
islet of Langerhans
18
6
endocrine pancreas
16
subcutaneous adipose tissue
12
+ See 3 more…
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