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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ATAC-seq
119
total RNA-seq
41
WGBS
35
single cell RNA-seq
24
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
Assay category
204
DNA accessibility
154
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
103
bed narrowPeak
100
fastq
24
bam
23
bigWig
16
tsv
15
txt
10
bed bed3
5
bed bed3+
3
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
Organism
407
Homo sapiens
Biosample type
225
primary cell
161
tissue
16
in vitro differentiated cells
7
cell line
Organ
163
pancreas
135
epithelium
40
liver
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
2
musculature of body
1
adipose tissue
1
brain
Project
213
HPAP
173
AMP
23
T1D
Genome assembly (visualization)
87
hg19
35
GRCh38
Lab
213
Klaus Kaestner, Upenn
106
AMP-T2D consortium
47
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
409 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
primary cell
pancreatic alpha cell
22
27
25
1
Langerhans cell
33
21
pancreatic beta cell
13
10
16
1
exocrine cell
39
pancreatic acinar cell
4
1
+ See 4 more…
tissue
islet of Langerhans
29
11
2
liver
20
20
coronary artery
35
retina
15
2
pigmented layer of retina
12
2
+ See 8 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
MIN6
1
See all biosamples
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