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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ATAC-seq
74
single cell RNA-seq
42
total RNA-seq
41
WGBS
22
snATAC-seq
15
ChIP-seq
Assay category
116
Transcription
110
DNA accessibility
41
DNA methylation
15
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
153
zippedFastqFolder
82
fastq
50
bed narrowPeak
39
bam
37
bigWig
14
tagAlign
7
txt
6
bigBed narrowPeak
4
bed broadPeak
1
bed bed3+
Organism
282
Homo sapiens
Biosample type
193
primary cell
89
tissue
Organ
128
pancreas
99
epithelium
40
liver
16
brain
2
musculature of body
1
adipose tissue
1
connective tissue
1
spleen
Project
193
HPAP
89
AMP
Genome assembly (visualization)
52
hg19
17
GRCh38
Lab
193
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
282 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
73
21
pancreatic alpha cell
24
15
25
pancreatic beta cell
14
1
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
19
6
brain
15
body of pancreas
4
skeletal muscle tissue
1
1
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