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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ATAC-seq
52
WGBS
46
total RNA-seq
37
single cell RNA-seq
22
snATAC-seq
15
small RNA-seq
14
RRBS
7
Hi-C
2
FAIRE-seq
Assay category
98
Transcription
87
DNA accessibility
66
DNA methylation
7
3D chromatin structure
Target of assay
3
control
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
99
bam
77
bigWig
58
tsv
25
bed narrowPeak
24
fastq
22
bed bedMethyl
22
bigBed bedMethyl
7
txt
4
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
258
Homo sapiens
Biosample type
163
primary cell
95
tissue
Organ
110
pancreas
93
epithelium
liver
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
5
limb
3
artery
2
pericardium
1
eye
Project
134
HPAP
124
AMP
Genome assembly (visualization)
101
hg19
72
GRCh38
Lab
134
Klaus Kaestner, Upenn
100
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
liver
month_released!
April, 2018
BIOSAMPLE
ASSAY
258 results
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Clear Filters
ATAC-seq
WGBS
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 22 more…
tissue
islet of Langerhans
18
6
1
heart left ventricle
2
4
2
1
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
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