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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ATAC-seq
52
WGBS
37
single cell RNA-seq
33
total RNA-seq
22
snATAC-seq
13
RRBS
12
small RNA-seq
6
Hi-C
2
FAIRE-seq
Assay category
87
DNA accessibility
82
Transcription
65
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
397
May, 2021
303
October, 2019
279
August, 2021
257
February, 2021
232
August, 2017
199
June, 2019
191
February, 2023
166
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
91
November, 2017
80
April, 2019
80
July, 2019
73
September, 2018
60
November, 2019
59
March, 2020
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
34
November, 2018
31
December, 2017
25
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
7
August, 2020
7
January, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
83
bam
60
bigWig
42
tsv
25
bed narrowPeak
24
fastq
21
bed bedMethyl
21
bigBed bedMethyl
7
txt
3
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
240
Homo sapiens
Biosample type
155
primary cell
85
tissue
Organ
110
pancreas
93
epithelium
liver
25
heart
18
brain
connective tissue
12
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
5
limb
3
artery
2
pericardium
1
eye
Project
134
HPAP
106
AMP
Genome assembly (visualization)
83
hg19
56
GRCh38
Lab
134
Klaus Kaestner, Upenn
82
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
liver
connective tissue
BIOSAMPLE
ASSAY
240 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
small RNA-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 15 more…
tissue
islet of Langerhans
18
6
1
heart left ventricle
2
4
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
1
2
1
+ See 22 more…
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