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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
DNase-seq
57
ATAC-seq
41
WGBS
34
single cell RNA-seq
31
ChIP-seq
22
snATAC-seq
6
total RNA-seq
Assay category
264
DNA accessibility
41
DNA methylation
40
Transcription
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
240
bam
226
bed narrowPeak
208
bigBed narrowPeak
208
bigWig
186
bed bed3+
185
bed broadPeak
185
bigBed broadPeak
134
zippedFastqFolder
24
fastq
7
txt
Organism
376
Homo sapiens
Biosample type
189
tissue
187
primary cell
Organ
108
pancreas
100
epithelium
81
kidney
45
musculature of body
liver
35
heart
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
242
AMP
134
HPAP
Genome assembly (visualization)
208
GRCh38
204
hg19
Lab
218
AMP-T2D consortium
134
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
1
audit script error
organ_slims!
liver
BIOSAMPLE
ASSAY
376 results
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Clear Filters
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
total RNA-seq
tissue
islet of Langerhans
18
6
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 19 more…
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