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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
total RNA-seq
18
small RNA-seq
17
ATAC-seq
15
RRBS
12
WGBS
8
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
Assay category
69
Transcription
27
DNA methylation
19
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
85
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
123
Homo sapiens
Biosample type
92
tissue
31
primary cell
Organ
25
heart
25
kidney
19
connective tissue
18
brain
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
123
AMP
Genome assembly (visualization)
92
hg19
91
GRCh38
Lab
109
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
123 results
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Clear Filters
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
kidney
11
1
3
1
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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