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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
14
ATAC-seq
3
single cell RNA-seq
1
Hi-C
1
total RNA-seq
Assay category
16
DNA binding
14
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
2
control
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
77
bam
fastq
47
bigWig
45
bed narrowPeak
45
bigBed narrowPeak
2
tsv
1
bed broadPeak
1
bedpe
1
hic
Organism
35
Homo sapiens
Biosample type
35
tissue
Organ
20
pancreas
14
kidney
1
adipose tissue
1
connective tissue
Project
35
AMP
Genome assembly (visualization)
28
GRCh38
18
hg19
Lab
17
AMP-T2D consortium
14
Katalin Susztak, Upenn
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
files.file_type!
fastq
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
tissue
endocrine pancreas
16
kidney
11
3
islet of Langerhans
3
1
adipose tissue
1
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