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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
526
DNA binding
11
DNA accessibility
4
Transcription
Target of assay
249
transcription factor
180
histone
180
histone modification
108
broad histone mark
94
control
72
narrow histone mark
66
recombinant protein
42
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
512
bam
431
bigWig
410
bed narrowPeak
409
bigBed narrowPeak
324
fastq
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
541
Homo sapiens
Biosample type
315
cell line
212
tissue
14
primary cell
Organ
315
liver
119
brain
56
vasculature
53
blood vessel
21
heart
19
kidney
11
epithelium
7
limb
7
musculature of body
5
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
541
AMP
Genome assembly (visualization)
388
GRCh38
379
hg19
Lab
527
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
3
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
541 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
ascending aorta
16
thoracic aorta
16
caudate nucleus
15
substantia nigra
15
+ See 14 more…
primary cell
kidney epithelial cell
5
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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