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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
37
ATAC-seq
23
total RNA-seq
3
single cell RNA-seq
2
Hi-C
Assay category
87
DNA binding
37
DNA accessibility
26
Transcription
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
31
control
25
broad histone mark
16
transcription factor
15
narrow histone mark
12
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
135
bam
82
bed narrowPeak
78
bigWig
60
fastq
45
bigBed narrowPeak
22
tsv
2
bedpe bed3+
2
hic
Organism
152
Homo sapiens
Biosample type
129
tissue
16
cell line
5
in vitro differentiated cells
2
primary cell
Organ
108
pancreas
25
adipose tissue
25
connective tissue
18
epithelium
14
kidney
Project
152
AMP
Genome assembly (visualization)
116
GRCh38
107
hg19
Lab
138
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
22
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
33
endocrine pancreas
16
kidney
11
3
subcutaneous adipose tissue
12
+ See 4 more…
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
See all biosamples
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