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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
62
DNA binding
5
DNA accessibility
1
DNA methylation
Target of assay
41
histone
41
histone modification
25
narrow histone mark
16
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
67
bam
67
fastq
55
bigWig
39
bed narrowPeak
25
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
68
Homo sapiens
Biosample type
366
tissue
315
cell line
68
in vitro differentiated cells
68
primary cell
Organ
41
pancreas
35
epithelium
9
brain
6
vasculature
3
blood vessel
Project
68
AMP
Genome assembly (visualization)
56
hg19
48
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic acinar cell
1
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