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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
12
single cell RNA-seq
9
ChIP-seq
6
WGBS
1
ATAC-seq
1
pCHi-C
1
total RNA-seq
Assay category
28
DNA accessibility
13
Transcription
9
DNA binding
6
DNA methylation
Target of assay
3
RNA binding protein
3
control
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
54
fastq
12
bam
11
bigWig
7
bed narrowPeak
7
tsv
6
bed broadPeak
6
bigBed broadPeak
6
bigBed narrowPeak
1
bed bed3
1
bed bed3+
Organism
57
Homo sapiens
Biosample type
627
tissue
411
cell line
57
primary cell
26
in vitro differentiated cells
Organ
12
epithelium
9
brain
6
pancreas
6
vasculature
3
blood vessel
3
connective tissue
Project
45
HPAP
12
AMP
Genome assembly (visualization)
12
hg19
8
GRCh38
Lab
45
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
27
audit script error
month_released!
December, 2018
BIOSAMPLE
ASSAY
57 results
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snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
osteoblast
1
1
1
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