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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
281
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
244
transcription factor
73
recombinant protein
32
RNA binding protein
21
histone
21
histone modification
15
chromatin remodeller
13
control
11
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
343
bam
315
fastq
288
bigWig
264
bed narrowPeak
257
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
12
tagAlign
4
tsv
3
tar
2
bed bed3+
1
hdf5
Organism
288
Homo sapiens
Biosample type
288
cell line
217
tissue
32
primary cell
4
in vitro differentiated cells
Organ
268
liver
12
kidney
8
pancreas
2
epithelium
Project
288
AMP
Genome assembly (visualization)
286
hg19
237
GRCh38
Lab
288
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
288 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
HepG2
268
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
glomerular visceral epithelial cell
1
1
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