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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
6
MeRIP-seq
Assay category
315
DNA binding
Target of assay
241
transcription factor
66
recombinant protein
59
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
315
fastq
314
bam
268
bigWig
249
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
Organism
321
Homo sapiens
Biosample type
321
cell line
86
tissue
15
primary cell
Organ
315
liver
6
epithelium
6
pancreas
Project
321
AMP
Genome assembly (visualization)
266
hg19
217
GRCh38
Lab
315
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2022
BIOSAMPLE
ASSAY
321 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
315
EndoC_BH1
6
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