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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
480
ChIP-seq
2
total RNA-seq
Assay category
480
DNA binding
Target of assay
259
transcription factor
118
histone
118
histone modification
100
control
69
broad histone mark
66
recombinant protein
49
narrow histone mark
48
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
466
bam
382
fastq
379
bigWig
358
bed narrowPeak
357
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
480
Homo sapiens
Biosample type
315
cell line
156
tissue
9
primary cell
Organ
315
liver
91
brain
51
pancreas
23
adipose tissue
23
connective tissue
6
epithelium
6
vasculature
3
blood vessel
Project
480
AMP
Genome assembly (visualization)
326
hg19
325
GRCh38
Lab
480
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
480 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
body of pancreas
33
layer of hippocampus
22
endocrine pancreas
16
caudate nucleus
15
substantia nigra
15
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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