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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
26
total RNA-seq
1
single cell RNA-seq
Assay category
126
DNA binding
Target of assay
71
control
47
histone
47
histone modification
25
narrow histone mark
22
broad histone mark
8
transcription factor
2
RNA binding protein
Date released
264
August, 2017
184
October, 2019
165
May, 2021
94
November, 2017
50
May, 2020
44
December, 2017
43
August, 2021
40
May, 2024
32
September, 2018
29
October, 2018
24
February, 2018
23
May, 2019
16
April, 2019
13
November, 2019
9
October, 2017
8
February, 2021
8
June, 2019
7
November, 2018
6
September, 2017
4
December, 2018
4
January, 2019
3
March, 2020
Available data
424
bam
366
bigWig
356
fastq
345
bed narrowPeak
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
126
Homo sapiens
Biosample type
66
cell line
35
primary cell
25
tissue
Organ
66
liver
32
pancreas
28
brain
23
epithelium
2
vasculature
1
blood vessel
Project
126
AMP
Genome assembly (visualization)
55
hg19
32
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
32
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
cell line
HepG2
66
primary cell
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
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tissue
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
middle frontal area 46
3
+ See 1 more…
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