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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
304
ChIP-seq
15
total RNA-seq
12
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
304
DNA binding
15
Transcription
12
DNA accessibility
2
3D chromatin structure
Target of assay
247
transcription factor
65
recombinant protein
40
histone
40
histone modification
33
RNA binding protein
23
narrow histone mark
17
broad histone mark
15
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
510
February, 2021
316
May, 2021
276
August, 2017
275
November, 2017
260
May, 2020
181
June, 2019
180
October, 2019
164
July, 2018
81
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
58
May, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
31
February, 2018
30
December, 2018
29
March, 2020
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
321
bigWig
314
bam
296
bed narrowPeak
269
fastq
254
bigBed narrowPeak
66
bed broadPeak
60
bigBed broadPeak
33
tagAlign
15
tsv
5
bed bed3+
3
tar
2
hic
1
bedpe bed3+
Organism
335
Homo sapiens
Biosample type
289
cell line
33
in vitro differentiated cells
7
tissue
6
primary cell
Organ
284
liver
15
brain
9
epithelium
8
embryo
vasculature
4
connective tissue
3
blood vessel
1
kidney
Project
335
AMP
Genome assembly (visualization)
381
GRCh38
335
hg19
Lab
315
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
335 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
Hi-C
cell line
HepG2
280
1
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
12
7
10
adipocyte
1
1
osteoblast
1
1
tissue
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
kidney
1
substantia nigra
1
primary cell
astrocyte of the cerebellum
3
hepatocyte
3
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