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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
18
ATAC-seq
Assay category
275
DNA binding
18
DNA accessibility
Target of assay
238
transcription factor
65
recombinant protein
34
RNA binding protein
18
histone
18
histone modification
16
control
15
chromatin remodeller
10
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
275
November, 2017
255
August, 2017
77
December, 2017
72
September, 2018
71
November, 2018
50
July, 2018
44
April, 2018
33
October, 2018
31
February, 2018
30
December, 2018
26
January, 2019
18
May, 2022
13
October, 2017
7
September, 2017
3
August, 2018
3
June, 2018
Available data
301
bigWig
298
bam
297
bed narrowPeak
293
fastq
258
bigBed narrowPeak
70
bed broadPeak
64
bigBed broadPeak
18
tagAlign
3
tar
1
bed bed3+
1
txt
Organism
293
Homo sapiens
Biosample type
266
cell line
18
tissue
9
primary cell
Organ
266
liver
18
pancreas
9
brain
6
epithelium
6
vasculature
3
blood vessel
Project
293
AMP
Genome assembly (visualization)
293
hg19
223
GRCh38
Lab
275
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
293 results
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ChIP-seq
ATAC-seq
cell line
HepG2
266
tissue
islet of Langerhans
18
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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