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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
14
ATAC-seq
Assay category
313
DNA binding
Transcription
14
DNA accessibility
Target of assay
238
transcription factor
65
recombinant protein
56
histone
56
histone modification
34
RNA binding protein
29
narrow histone mark
27
broad histone mark
16
control
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
201
October, 2019
187
August, 2017
187
June, 2019
141
May, 2021
97
May, 2019
77
December, 2017
72
May, 2020
71
November, 2018
65
April, 2019
46
September, 2018
45
August, 2021
45
February, 2023
45
October, 2018
39
May, 2022
39
November, 2019
30
December, 2018
29
February, 2021
26
July, 2019
21
January, 2019
19
March, 2020
16
February, 2018
13
October, 2017
7
September, 2017
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2020
Available data
327
bigWig
326
bam
321
fastq
305
bed narrowPeak
272
bigBed narrowPeak
70
bed broadPeak
64
bigBed broadPeak
18
tagAlign
3
tar
Organism
327
Homo sapiens
Biosample type
266
cell line
55
primary cell
6
tissue
Organ
266
liver
46
pancreas
41
epithelium
15
brain
6
vasculature
3
blood vessel
Project
327
AMP
Genome assembly (visualization)
327
hg19
326
GRCh38
Lab
327
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
ATAC-seq
cell line
HepG2
266
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
pancreatic beta cell
4
astrocyte of the cerebellum
3
+ See 3 more…
tissue
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
substantia nigra
1
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