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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
26
total RNA-seq
14
ATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
374
DNA binding
26
Transcription
24
DNA accessibility
Target of assay
299
transcription factor
78
recombinant protein
56
histone
56
histone modification
55
RNA binding protein
29
narrow histone mark
27
broad histone mark
22
chromatin remodeller
16
control
5
other context
5
other post-translational modification
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
424
bigWig
423
bam
418
fastq
376
bed narrowPeak
343
bigBed narrowPeak
79
bed broadPeak
73
bigBed broadPeak
26
tsv
18
tagAlign
9
bed bed3+
3
tar
Organism
424
Homo sapiens
Biosample type
320
cell line
81
primary cell
23
tissue
Organ
315
liver
75
pancreas
67
epithelium
17
brain
12
blood
12
bodily fluid
6
vasculature
4
spleen
3
blood vessel
1
adipose tissue
1
connective tissue
Project
424
AMP
Genome assembly (visualization)
431
GRCh38
424
hg19
Lab
424
AMP-T2D consortium
Audit category:
44
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
424 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
308
GM12878
12
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 3 more…
tissue
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
cingulate gyrus
2
+ See 6 more…
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