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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
319
ChIP-seq
26
total RNA-seq
21
ATAC-seq
Assay category
319
DNA binding
26
Transcription
21
DNA accessibility
Target of assay
238
transcription factor
65
recombinant protein
62
histone
62
histone modification
34
RNA binding protein
32
broad histone mark
30
narrow histone mark
16
control
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
366
bigWig
364
bam
360
fastq
317
bed narrowPeak
278
bigBed narrowPeak
74
bed broadPeak
64
bigBed broadPeak
26
tsv
24
tagAlign
3
tar
Organism
366
Homo sapiens
Biosample type
266
cell line
81
primary cell
19
tissue
Organ
266
liver
77
pancreas
67
epithelium
21
brain
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
366
AMP
Genome assembly (visualization)
366
GRCh38
366
hg19
Lab
365
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
45
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
366 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
cell line
HepG2
266
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 3 more…
tissue
brain
6
body of pancreas
4
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
+ See 4 more…
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