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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
ChIP-seq
120
total RNA-seq
48
single cell RNA-seq
Assay category
385
DNA binding
168
Transcription
Target of assay
234
transcription factor
77
histone
77
histone modification
71
control
65
recombinant protein
44
broad histone mark
33
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
535
bam
477
bigWig
353
fastq
294
bed narrowPeak
293
bigBed narrowPeak
164
tsv
67
tagAlign
57
bed broadPeak
51
bigBed broadPeak
3
tar
Organism
553
Homo sapiens
Biosample type
294
cell line
202
tissue
57
primary cell
Organ
294
liver
157
pancreas
91
brain
39
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
553
AMP
Genome assembly (visualization)
427
GRCh38
424
hg19
Lab
553
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
553 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
294
tissue
islet of Langerhans
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 13 more…
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