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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
294
ChIP-seq
38
ATAC-seq
Assay category
294
DNA binding
38
DNA accessibility
Target of assay
226
transcription factor
65
histone
65
histone modification
65
recombinant protein
40
broad histone mark
30
RNA binding protein
25
narrow histone mark
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
294
November, 2017
210
June, 2019
189
October, 2019
133
May, 2021
126
August, 2017
106
August, 2021
97
May, 2019
68
November, 2018
65
April, 2019
65
February, 2023
61
December, 2017
46
September, 2018
44
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
14
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
395
bam
333
bigWig
332
bed narrowPeak
327
fastq
293
bigBed narrowPeak
134
zippedFastqFolder
67
tagAlign
57
bed broadPeak
51
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
332
Homo sapiens
Biosample type
230
cell line
96
tissue
6
primary cell
Organ
250
liver
64
brain
18
pancreas
4
epithelium
4
vasculature
2
blood vessel
Project
332
AMP
Genome assembly (visualization)
278
hg19
263
GRCh38
Lab
294
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
332 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
230
tissue
liver
20
islet of Langerhans
18
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
+ See 3 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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