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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
417
DNA binding
27
Transcription
14
DNA accessibility
Target of assay
234
transcription factor
109
histone
109
histone modification
71
control
65
recombinant protein
61
broad histone mark
48
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
399
May, 2021
388
August, 2017
385
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
218
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
443
bam
385
bigWig
376
fastq
340
bed narrowPeak
307
bigBed narrowPeak
67
tagAlign
57
bed broadPeak
51
bigBed broadPeak
26
tsv
3
tar
1
csv
Organism
458
Homo sapiens
Biosample type
294
cell line
82
primary cell
82
tissue
Organ
294
liver
91
brain
72
pancreas
67
epithelium
6
vasculature
3
blood vessel
Project
458
AMP
Genome assembly (visualization)
335
GRCh38
332
hg19
Lab
458
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
458 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
294
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 4 more…
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
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