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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
10
MeRIP-seq
8
ATAC-seq
Assay category
412
DNA binding
8
DNA accessibility
Target of assay
241
transcription factor
97
histone
97
histone modification
76
control
66
recombinant protein
60
broad histone mark
37
narrow histone mark
34
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
398
bam
339
bigWig
332
fastq
319
bed narrowPeak
312
bigBed narrowPeak
92
tagAlign
68
bed broadPeak
58
bigBed broadPeak
3
tar
Organism
430
Homo sapiens
Biosample type
321
cell line
109
tissue
primary cell
Organ
315
liver
98
brain
15
pancreas
6
epithelium
1
adipose tissue
1
connective tissue
1
spleen
Project
430
AMP
Genome assembly (visualization)
288
GRCh38
285
hg19
Lab
419
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
430 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
cell line
HepG2
315
EndoC_BH1
6
tissue
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
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