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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
356
DNA binding
27
Transcription
14
DNA accessibility
Target of assay
244
transcription factor
66
recombinant protein
59
control
50
histone
50
histone modification
37
RNA binding protein
25
broad histone mark
25
narrow histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
397
fastq
395
bam
349
bigWig
301
bed narrowPeak
269
bigBed narrowPeak
64
bed broadPeak
64
bigBed broadPeak
26
tsv
12
tagAlign
3
tar
1
csv
Organism
397
Homo sapiens
Biosample type
315
cell line
82
primary cell
tissue
Organ
315
liver
72
pancreas
67
epithelium
9
brain
6
vasculature
3
blood vessel
Project
397
AMP
Genome assembly (visualization)
347
hg19
295
GRCh38
Lab
397
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
397 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
315
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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