Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
ChIP-seq
192
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
460
DNA binding
192
Transcription
100
DNA accessibility
Target of assay
212
transcription factor
123
control
122
histone
122
histone modification
66
recombinant protein
63
narrow histone mark
59
broad histone mark
41
RNA binding protein
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
751
bam
641
bigWig
385
bed narrowPeak
384
fastq
357
bigBed narrowPeak
191
tsv
128
tagAlign
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
753
Homo sapiens
Biosample type
343
tissue
258
cell line
152
primary cell
Organ
451
liver
79
brain
53
pancreas
23
adipose tissue
23
connective tissue
4
epithelium
2
vasculature
1
blood vessel
Project
708
AMP
45
T1D
Genome assembly (visualization)
518
hg19
479
GRCh38
Lab
708
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
9
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
November, 2019
BIOSAMPLE
ASSAY
753 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
liver
50
143
body of pancreas
33
layer of hippocampus
22
endocrine pancreas
16
caudate nucleus
14
+ See 7 more…
cell line
HepG2
257
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 28 more…
See all biosamples
Download