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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
294
ChIP-seq
190
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
294
DNA binding
190
Transcription
100
DNA accessibility
Target of assay
197
transcription factor
94
control
92
histone
histone modification
66
recombinant protein
52
narrow histone mark
40
broad histone mark
30
RNA binding protein
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
715
February, 2021
314
May, 2020
299
August, 2021
271
November, 2017
259
May, 2021
208
August, 2017
205
February, 2023
200
May, 2022
168
July, 2018
111
October, 2019
108
July, 2019
79
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
12
June, 2019
11
September, 2017
10
December, 2019
10
October, 2017
8
January, 2018
7
August, 2020
5
March, 2023
5
May, 2024
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
573
bam
492
bigWig
306
fastq
239
bed narrowPeak
239
bigBed narrowPeak
189
tsv
bed broadPeak
47
bigBed broadPeak
34
tagAlign
3
tar
Organism
585
Homo sapiens
Biosample type
257
cell line
178
tissue
150
primary cell
Organ
423
liver
15
brain
2
epithelium
2
vasculature
1
blood vessel
Project
540
AMP
45
T1D
Genome assembly (visualization)
443
hg19
360
GRCh38
Lab
540
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
585 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
256
1
tissue
liver
23
143
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
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