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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
8
ATAC-seq
Assay category
103
DNA binding
8
DNA accessibility
Target of assay
74
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
8
transcription factor
2
RNA binding protein
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
407
bam
348
bigWig
341
fastq
325
bed narrowPeak
bigBed narrowPeak
92
tagAlign
74
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
111
Homo sapiens
Biosample type
66
cell line
42
tissue
3
primary cell
Organ
66
liver
38
brain
5
pancreas
2
epithelium
2
vasculature
1
adipose tissue
1
blood vessel
1
connective tissue
1
spleen
Project
111
AMP
Genome assembly (visualization)
30
hg19
8
GRCh38
Lab
110
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
66
tissue
brain
9
cingulate gyrus
8
layer of hippocampus
6
body of pancreas
4
substantia nigra
4
+ See 6 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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