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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
1
ATAC-seq
Assay category
73
DNA binding
1
DNA accessibility
Target of assay
47
transcription factor
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
41
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
407
bam
348
bigWig
341
fastq
325
bed narrowPeak
318
bigBed narrowPeak
92
tagAlign
74
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
74
Homo sapiens
Biosample type
58
cell line
10
tissue
6
primary cell
Organ
58
liver
15
brain
4
epithelium
4
vasculature
2
blood vessel
1
pancreas
Project
74
AMP
Genome assembly (visualization)
74
hg19
59
GRCh38
Lab
73
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
brain
3
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
islet of Langerhans
1
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primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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