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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
64
ChIP-seq
Assay category
187
DNA accessibility
64
DNA binding
Target of assay
47
transcription factor
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
15
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
610
bam
544
bigWig
523
bed narrowPeak
522
bigBed narrowPeak
324
fastq
257
bed broadPeak
251
bigBed broadPeak
187
bed bed3+
78
tagAlign
3
tar
Organism
251
Homo sapiens
Biosample type
163
tissue
58
cell line
30
primary cell
Organ
78
kidney
60
liver
36
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
11
vasculature
7
blood vessel
6
connective tissue
4
eye
4
pancreas
2
artery
1
adipose tissue
Project
251
AMP
Genome assembly (visualization)
237
GRCh38
228
hg19
Lab
251
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
251 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 34 more…
cell line
HepG2
58
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
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