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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
348
ChIP-seq
15
total RNA-seq
Assay category
348
DNA binding
15
Transcription
Target of assay
244
transcription factor
67
control
66
recombinant protein
37
RNA binding protein
34
histone
34
histone modification
18
narrow histone mark
16
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
431
bam
365
bigWig
363
fastq
329
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
15
tsv
3
tar
Organism
363
Homo sapiens
Biosample type
315
cell line
39
in vitro differentiated cells
9
primary cell
Organ
315
liver
13
embryo
9
brain
6
epithelium
6
vasculature
3
blood vessel
Project
363
AMP
Genome assembly (visualization)
306
hg19
254
GRCh38
Lab
363
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
23
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
363 results
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ChIP-seq
total RNA-seq
cell line
HepG2
315
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
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primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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