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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
328
ChIP-seq
190
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
328
DNA binding
190
Transcription
100
DNA accessibility
Target of assay
244
transcription factor
66
recombinant protein
60
control
37
RNA binding protein
21
histone
21
histone modification
15
chromatin remodeller
12
narrow histone mark
9
broad histone mark
2
other context
2
other post-translational modification
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
October, 2022
3
June, 2018
1
August, 2022
Available data
675
bam
594
bigWig
340
bed narrowPeak
324
fastq
312
bigBed narrowPeak
189
tsv
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
619
Homo sapiens
Biosample type
304
cell line
159
tissue
156
primary cell
Organ
447
liver
25
brain
6
epithelium
6
vasculature
3
blood vessel
Project
574
AMP
45
T1D
Genome assembly (visualization)
496
hg19
414
GRCh38
Lab
574
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
month_released!
October, 2022
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
619 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
303
1
tissue
liver
143
layer of hippocampus
8
middle frontal area 46
6
cerebellum (Hemisphere)
2
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
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