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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
17
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
333
DNA binding
17
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
252
transcription factor
66
recombinant protein
60
control
35
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
0
December, 2019
Available data
322
bam
315
fastq
290
bigWig
263
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
17
tsv
12
tagAlign
3
tar
1
bedpe bed3+
1
hic
1
vcf
Organism
359
Homo sapiens
Biosample type
359
cell line
314
tissue
44
in vitro differentiated cells
18
primary cell
Organ
346
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
359
AMP
Genome assembly (visualization)
289
hg19
225
GRCh38
Lab
325
AMP-T2D consortium
34
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
359 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
333
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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