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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
434
ChIP-seq
1
Hi-C
Assay category
434
DNA binding
1
3D chromatin structure
Target of assay
270
transcription factor
86
histone
86
histone modification
73
control
66
recombinant protein
50
broad histone mark
37
RNA binding protein
36
narrow histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
420
bam
358
bigWig
353
fastq
339
bed narrowPeak
338
bigBed narrowPeak
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
3
tar
Organism
435
Homo sapiens
Biosample type
343
cell line
89
tissue
3
primary cell
Organ
316
liver
91
brain
27
blood
27
bodily fluid
7
spleen
epithelium
6
vasculature
3
blood vessel
Project
435
AMP
Genome assembly (visualization)
306
GRCh38
305
hg19
Lab
435
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
435 results
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Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
315
1
GM12878
27
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
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primary cell
astrocyte of the cerebellum
3
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