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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
440
ChIP-seq
77
ATAC-seq
41
WGBS
38
snATAC-seq
34
single cell RNA-seq
26
total RNA-seq
1
Hi-C
Assay category
440
DNA binding
115
DNA accessibility
60
Transcription
41
DNA methylation
1
3D chromatin structure
Target of assay
272
transcription factor
88
histone
88
histone modification
75
control
66
recombinant protein
50
broad histone mark
39
RNA binding protein
38
narrow histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
450
bam
384
bigWig
383
fastq
381
bed narrowPeak
342
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
657
Homo sapiens
Biosample type
343
cell line
163
tissue
151
primary cell
Organ
356
liver
112
pancreas
91
brain
86
epithelium
35
blood
35
bodily fluid
7
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
507
AMP
134
HPAP
16
T1D
Genome assembly (visualization)
350
hg19
310
GRCh38
Lab
443
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
40
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
657 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
snATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
cell line
HepG2
315
1
GM12878
27
tissue
liver
20
20
islet of Langerhans
18
4
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 6 more…
primary cell
Langerhans cell
21
33
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
+ See 3 more…
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