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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
ChIP-seq
190
total RNA-seq
187
DNase-seq
100
ATAC-seq
1
pCHi-C
Assay category
487
DNA binding
287
DNA accessibility
190
Transcription
Target of assay
248
transcription factor
134
histone
134
histone modification
102
control
76
narrow histone mark
66
recombinant protein
58
broad histone mark
41
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
893
bam
804
bigWig
550
bed narrowPeak
522
bigBed narrowPeak
324
fastq
257
bed broadPeak
251
bigBed broadPeak
189
tsv
187
bed bed3+
128
tagAlign
3
tar
Organism
965
Homo sapiens
Biosample type
438
tissue
316
cell line
211
primary cell
Organ
511
liver
121
brain
81
kidney
43
musculature of body
35
heart
32
limb
26
epithelium
18
connective tissue
18
ureter
13
vasculature
8
blood vessel
7
eye
4
pancreas
2
artery
1
adipose tissue
Project
920
AMP
45
T1D
Genome assembly (visualization)
728
hg19
697
GRCh38
Lab
920
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
965 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
liver
50
143
layer of hippocampus
22
heart
18
muscle of arm
17
caudate nucleus
15
1
+ See 39 more…
cell line
HepG2
315
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
+ See 46 more…
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